Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs9472922 | chr6:46927019 | A/G | 1.65E-5 | 404 | 15.13 | 16.37 | 12.5 | KM Plot |
| LGG | rs9472926 | chr6:46927772 | G/A | 1.91E-5 | 402 | 15.03 | 16.1 | 12.5 | KM Plot |
| LGG | rs9472927 | chr6:46928744 | T/C | 2.34E-5 | 402 | 15.03 | 16.37 | 11.8 | KM Plot |
| LGG | rs9472928 | chr6:46928805 | A/G | 1.91E-5 | 402 | 15.03 | 16.1 | 12.5 | KM Plot |
| LGG | rs9472929 | chr6:46929729 | T/C | 1.91E-5 | 402 | 15.03 | 16.1 | 12.5 | KM Plot |
| LGG | rs9472930 | chr6:46929783 | T/A | 1.91E-5 | 402 | 15.03 | 16.1 | 12.5 | KM Plot |
| LGG | rs9472931 | chr6:46929947 | G/A | 1.91E-5 | 402 | 15.03 | 16.1 | 12.5 | KM Plot |
| LGG | rs9472932 | chr6:46930035 | T/C | 1.91E-5 | 402 | 15.03 | 16.1 | 12.5 | KM Plot |
| LGG | rs9472933 | chr6:46931437 | T/C | 1.6E-5 | 405 | 15.13 | 16.55 | 12.5 | KM Plot |
| LGG | rs9472935 | chr6:46931783 | A/G | 1.55E-5 | 407 | 14.93 | 16.75 | 12.5 | KM Plot |
| LGG | rs9472936 | chr6:46932004 | T/C | 0.000236 | 403 | 14.92 | 16.57 | 13.2 | KM Plot |
| LGG | rs9472937 | chr6:46932023 | C/T | 0.000236 | 403 | 14.92 | 16.57 | 13.2 | KM Plot |
| LGG | rs9472938 | chr6:46932024 | A/G | 0.000236 | 403 | 14.92 | 16.57 | 13.2 | KM Plot |
| LGG | rs9472939 | chr6:46932200 | C/T | 1.51E-5 | 407 | 15.03 | 16.73 | 12.5 | KM Plot |
| LGG | rs9472940 | chr6:46932290 | T/C | 1.51E-5 | 407 | 15.03 | 16.73 | 12.5 | KM Plot |